Basic Information

Symbol
SNORD43
RNA Class
snoRNA
Alias
Small Nucleolar RNA, C/D Box 43 U43 RNA, U43 Small Nuclear RNU43 U43 Small Nucleolar RNA U43 Small Nuclear RNA U43 SnoRNA SnoDB0935
Location (GRCh38)
22:39319050-39319113
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
Tissue/body fluid identification
External database
HGNC NCBI Ensembl OMIM RNAcentral

Sequence & Structure

Transcript
SNORD43
Sequence length
62 nt
GC content
0.4516

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-14.70 kcal/mol
Thermodynamic ensemble
Free energy: -15.94 kcal/mol
Frequency: 0.1334
Diversity: 11.07
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
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Thermodynamic Ensemble Prediction
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Summary

No relevant information is available at the moment.

Forensic Context

A study in human forensic body fluid samples identified SNORD43 as one of the most stable endogenous reference genes for miRNA expression normalization, ranking it third in a comprehensive analysis of five body fluids [Wei et al. DOI:10.1016/j.fsigen.2023.102827]. Earlier research in human samples also empirically determined SNORD43 to be among the most stable genes, recommending it as part of a normalization group with SNORD24 and SNORD38B for reliable RT-qPCR analysis of forensically relevant body fluids [Sauer et al. DOI:10.1016/j.fsigen.2014.08.005].