Basic Information

Symbol
SNORD89
RNA Class
snoRNA
Alias
Small Nucleolar RNA, C/D Box 89 HBII-289 SnoDB0098 SNORD89
Location (GRCh38)
2:101272936-101273049
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
Cause of death analysis
External database
HGNC NCBI Ensembl RNAcentral

Sequence & Structure

Transcript
SNORD89
Sequence length
114 nt
GC content
0.4737

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-23.80 kcal/mol
Thermodynamic ensemble
Free energy: -26.72 kcal/mol
Frequency: 0.0087
Diversity: 34.21
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
(((((((......(((.((.....((.(((((((.(((....)))..)))))))((((.....)))).((.((((......)))).))..))......)).)))...)))))))
Thermodynamic Ensemble Prediction
(((((((...,{,({{.{(....,({.,,,{{||.{{{,.,.}}||,|}}||}|((({.....)))}},|}{{||......,}}).}}..}},.....},.)))...)))))))
Summary

No relevant information is available at the moment.

Forensic Context

A study in humans using Summary data-based Mendelian randomization analysis of genome-wide association studies data identified the SNORD89 as one of 17 genes whose expression levels are pleiotropically associated with sepsis [Yang et al. DOI:10.1111/jcmm.18559].