Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_AAGAB_0002800

Sequence Length

462 nt

GC Content

0.4221

AUAUCCUUGGAACAGAAGAUCUUAUUGUGGAAGUGACUUCCAAUGAUGCUGUGAGAUUUUAUCCCUGGACCAUUGAUAAUAAAUACUAUUCAGCAGACAUCAAUCUAUGUGUGGUGCCAAACAAAUUUCUUGUUACUGCAGAGAUUGCAGAAUCUGUCCAAGCAUUUGUGGUUUACUUUGACAGCACACAAAAAUCGGGCCUUGAUAGUGUCUCCUCAUGGCUUCCACUGGCAAAAGCAUGGUUACCUGAGGUGAUGAUCUUGGUCUGCGAUAGAGUGUCUGAAGAUGGUAUAAACCGACAAAAAGCUCAAGAAUGGUGCAUCAAACAUGGCUUUGAAUUGGUAGAACUUAGUCCAGAGGAGUUGCCUGAGGAGGAUGAUGACUUCCCAGAAUCUACAGGAGUAAAGCGAAUUGUCCAAGCCCUGAAUGCCAAUGUGUGGUCCAAUGUAGUGAUGAAGAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-114.50 kcal/mol

Ensemble Metrics

Free Energy: -123.57

Frequency: 0.0000

Diversity: 134.00

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((..(((..(((((((((((((..((((((...))))))........))))))))))....)))..)))..)))).....((((((((.(((((...((((((...(((((((.(((.........))).))))))).)))))).....)))))...(((.(((((((((((((((..(((.((((......((((((..(((...(((.(((((.((...(((...((....)).)))...))))))).))).)))..)))))).......)))))))..)).))))..)))).)))))..)))...))))))))(((((.((((((((....(((((((........(((..(((.....)))..)))((((..((......))..)))).((((.((...((.....))....))))))..)))))))....)).)).))))..))))).......

Thermodynamic Ensemble Prediction

,({{(.,(((..{{,((((((((((.{((((((...)))))}.....,}.)))))))))).,{{|||{{|,}..},,,....,((((((((.,((((({({,{(({,{{((((,((.((({,{{,,..,|||||,|||||,|}}})},||..}})}}..,||{.||||||||{{,{|||}.||,}||||......((((((..(((..,(((.(((((.((...(((.,.((....)).)))...))))))).))),)))..)))))).,}).},)))))))..))}))))}.,|||{|,,,|{,||},..},}||},,,{{||.,|{|||||}}..,|||||,.......}|||}}.})}.....(((.(((((.......))))))))....,.((((.((...({,...,})....))))))..,}|||,}...}))}))}}})}.})}||}....,}.