Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ABCA1_0000200

Sequence Length

250 nt

GC Content

0.3920

CUUUCUGCGGGUGAUGAGCCGGUCAAUGCCCCUCUUCAUGACGCUGGCCUGGAUUUACUCAGUGGCUGUGAUCAUCAAGGGCAUCGUGUAUGAGAAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUUCAUUAUCUUCUCUGGCCAGGAUAUUCAGCAUCCUCUCCCAGAGCAAAAAGCGACUCCACAUAGAAGACUACUCUGUUUCUCAGACAACACUUGACCAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-42.60 kcal/mol

Ensemble Metrics

Free Energy: -47.55

Frequency: 0.0003

Diversity: 34.77

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((.......)).)))..(((((((((((...((.(((((((.(.(((((......)))).).).))).)))).))))))))..(((.((((((((((..............................................................(((((..(((((.......)))))...)))))((.....))..))))..(((((.......))))))))))).))).....)))))..

Thermodynamic Ensemble Prediction

((({(.......}}.)))..(((((((((((...{{.(((((((.({(((((......})),.)})}))).)))).}})))))}.{(((.((((((((((.............................................................{(((((..(((((.......)))))...)))))|,.....}}..}|},..,{{{,.,....,))),})))))).}},,}...)))))..