Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ABCA1_0004100

Sequence Length

234 nt

GC Content

0.4231

AGAAAACAAAACACUGCAGAUAUCCUUCAGGACCUGACAGGAAGAAACAUUUCGGAUUAUCUGGUGAAGACGUAUGUGCAGAUCAUAGCCAAAAGCUUAAAGAACAAGAUCUGGGUGAAUGAGUUUAGGUAUGGCGGCUUUUCCCUGGGUGUCAGUAAUACUCAAGCACUUCCUCCGAGUCAAGAAGUUAAUGAUGCCAUCAAACAAAUGAAGAAACACCUAAAGCUGGCCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-37.90 kcal/mol

Ensemble Metrics

Free Energy: -43.83

Frequency: 0.0001

Diversity: 61.34

Structure Visualization

Structure Prediction

MFE Structure Prediction

...((((......(((((.((((.((((...(((.((.((...(((....)))...)).)).)))))))..)))).))))).((((.(((.....(((.......))).....)))..)))))))).....((((((((((....(((((((((.((((..((..(.((((.....)))))..)).)))).))))))).(((......))).....))...)))))).))))..

Thermodynamic Ensemble Prediction

...,,,{......(((((.((((.(((({..,{(.((.,{,,.{{,....)))...,,.)).)))))))..)))).))))).{{{{.(((....,(((.......}}}...,.}})..,))))))).,,}.((((((((({....,{((((({{.,,,,,{((..,.((((,....}}}}...)},)),..)))}}}}.{({......})}....,}}}}})))))),})))..