Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ABCA1_0007000

Sequence Length

246 nt

GC Content

0.4268

UGGUACCUAAUGUAUUUACAUCCCAACCUGAAACUCCUAUCCACUUAUUUACCUUUUAAUGAGCCUCUUAACUCAAGUGCAGUCUGAGGACCAGCAGCAUCAGGAUCACUUGGGAACUUGUUAGAAAUUCAGCAACCUGGGCCCAGCUCAGACCUACCGAAUCAGAAUCUGUGCAUUUUAACAAGGUUCUUGAGUGGUUGAACACACAUUAAAGCAUGAGAAGCAUUGAACUAGACAUGUAGCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-43.90 kcal/mol

Ensemble Metrics

Free Energy: -50.15

Frequency: 0.0000

Diversity: 73.23

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.(((.((((.......(((((..(((..(((........((((((........))))))............))).)))..)).)))......)))).)))))))((.((..((.((((((...(((((....((((((...))))))..(.((((..(((((((((((........)).)))))).))).)))).).............((.......)).))))))).)))).))..))))

Thermodynamic Ensemble Prediction

(({(.{((.((((.......(((((,,((({..{{.,,.....((((((........)))))),,,,....|||.,,,,,)),.}),)),..,}.,)}})})))}}}}{||||},{{,((((,(...,{|||},..((((((...))))))..,.{{{{..(((((((((((........))}})))))}})),}))}.,......,..,,..||}}..,..})}{||,,|||,,}}.}),,})))