Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ABCA1_0010700

Sequence Length

250 nt

GC Content

0.3440

GGUUAUUAUGAAUUAAAUACUGGAGAUGAGAUACACAAAACGUCUUGAGUACACAGUAGCUGCCCAAUAUUGGCUGUAAGUAUUAUAAAUCUACAAGCUGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAUCCUGAGAACACUAAACUCUACAUCUCCCUUCCCGAGCAAGGAGCUGGCUGAAGCCACAAAAACAUUGCUGCAUAGUCUUGGGACUCUGGCCCAGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-34.70 kcal/mol

Ensemble Metrics

Free Energy: -39.20

Frequency: 0.0007

Diversity: 48.07

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((............((((.((((((............)))))).)))).....((((((((.......)))((((.((.......)).)))))))))........................................................((((...............))))...((((((((..(.(((((((....))))..........))).)...).)))))))...)))))(....)

Thermodynamic Ensemble Prediction

(((((.,..........{{{{,((((((,,,.........}}}})),}))}...,|{{{{|{{{......,|||((({.{,.......,,,)))}}))),........................................................{{{,.........}},.}}))))}..((((((((..(.(((((((....))))..........))).).,.).)))))))...}))))(....)