Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ABCA1_0012300

Sequence Length

363 nt

GC Content

0.3609

GUCAUCUUCCACCUAUAUCCAUCCUUGCAGUGACUGGUGGAUAUGAUCAUUCCUGGUGAUUCCCUGUAAAAUACUAGAUUUAUUUAUUCUUUCAUAAAGUUAUGAGUAGACAAAUCAGUCAGCUUCAACCUUUCCUUUACCUUAUAGAUAGUAUCAGCAGAAAGAACUCAAUAAUUCUGUCUUAGGAACUCAGCCAGGCUAAUAUGUAUUAUAAUACACACAUACAUAUGCACACACAUACACACAUGUGCAUACCUUAGAUCACAAAUUCAACAUCUCAACUUAGCCGCCAAAGCCACUUCUGUGUCUUGUCUAUUCUGAAUAUGCUUUAAGGUUAAAUUAGCCAUGAAUCUGUUCAGAUCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-61.80 kcal/mol

Ensemble Metrics

Free Energy: -71.25

Frequency: 0.0000

Diversity: 87.71

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((..((((((......................)))))).)))))....((((((((((((.............(((((((((((........((((....((((.(((......))).))))....))))..........)))))))).))).((((((............))))))....)))).))).)))))......(((((....)))))........((((((((............)))))))).....((........)).....................(((.(((....))).)))......((((((((.(.((((.(((((...))))).)))).)))))))))...

Thermodynamic Ensemble Prediction

(,((,..{{{{{{.,{,{{((.,..,...,.....)))))),)))}|....{((((((((({(,{{,.....{{,{((,(((((,,((({{{(..,,,{...,((({.(((......))).})}}.,..}},,..........,.,}|,,},,,..|,,||}}}}}...,}}}}.))))).,}})))).))},))))|,,,,,,(((((....,}}},...,,,..{(((((((............)))))))}.....{{,.......,,............,,},,,...{{(.(((....))).)))).){..((((((((.(.((((.(((((...))))).)))).)))))))))..}