Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ABCA1_0013200

Sequence Length

513 nt

GC Content

0.5205

UUAAUGACCAGCCACGGCGUCCCUGCUGUGAGCUCUGGCCGCUGCCUUCCAGGGCUCCCGAGCCACACGCUGGGGGUGCUGGCUGAGGGAACAUGGCUUGUUGGCCUCAGCUGAGGUUGCUGCUGUGGAAGAACCUCACUUUCAGAAGAAGACAAACAUGUCAGCUGCUGCUGGAAGUGGCCUGGCCUCUAUUUAUCUUCCUGAUCCUGAUCUCUGUUCGGCUGAGCUACCCACCCUAUGAACAACAUGAAUGCCAUUUUCCAAAUAAAGCCAUGCCCUCUGCAGGAACACUUCCUUGGGUUCAGGGGAUUAUCUGUAAUGCCAACAACCCCUGUUUCCGUUACCCGACUCCUGGGGAGGCUCCCGGAGUUGUUGGAAACUUUAACAAAUCCAUUGUGGCUCGCCUGUUCUCAGAUGCUCGGAGGCUUCUUUUAUACAGCCAGAAAGACACCAGCAUGAAGGACAUGCGCAAAGUUCUGAGAACAUUACAGCAGAUCAAGAAAUCCAGCUCAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-165.90 kcal/mol

Ensemble Metrics

Free Energy: -175.62

Frequency: 0.0000

Diversity: 179.61

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((..((....))))).((((((((((((((((..........))))))))).(((((((((.((.(((((((.(((((...((((.(((((.(((((..(..((.((.(((.(((((((....(((...(((...((((..(((((.(((...((((((((((......))))).))))).....))).)))))))))...)))..)))...))))..))).)))))..))..)..))))).....))))).))))......)))))))))))).))(((((...))))).(((((...((.((((....)))).))...)))))..(((((((.....(((((((.((((....))))))))))).)))))))..............)))))))))..(((((((((((((.....((..((((((.........))))))..)).(((((.....))))))))....))))))))))..))))))).....((........))..

Thermodynamic Ensemble Prediction

....{({{,,((,,{{||||,.((((((((,(((({((,,,,,,.,..})))))))}.(|(((||||.||.|||||||}||((({{{({(({({{{{.||||{.}||||||(((((((.((........}}))))}||...((((.,({{((,{,....|||{{{{{{{.,,,,,)))))},)))).....,},.}}}}}}}}},,.|||{{{{{{{.,|||.||||{||......{,{|.....)}}}...}}}}}.|}}}......}}}}}}}}||||{}|((((.....}}},{(((,.{{{(({,{{....,|,,,.,,...}})))))|,,||||.....,{{{|||,|{||,,,,,}},))|}))}|||||}},...,,,,..,,,..,)))))))),,((((((((((,(({..,.((..((((((.........))))))..)).(((((.....))))),),.}}}))))))))))..)))),))}}},.|,......}.},..