Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ABCC1_0004400

Sequence Length

364 nt

GC Content

0.5275

GCCUUGGGAUUUUUGCUGUGGAUCGUCUGCUGGGCAGACCUCUUCUACUCUUUCUGGGAAAGAAGUCGGGGCAUAUUCCUGGCCCCAGUGUUUCUGGUCAGCCCAACUCUCUUGGGCAUCACCAUGCUGCUUGCUACCUUUUUAAUUCAGCUGGAGAGGAGGAAGGGAGUUCAGUCUUCAGGGAUCAUGCUCACUUUCUGGCUGGUAGCCCUAGUGUGUGCCCUAGCCAUCCUGAGAUCCAAAAUUAUGACAGCCUUAAAAGAGAUCGCUCACCCCUGUUCUCGGAAACCAUCCACGACCCUAAUCCCUGCCCAGAGUCCAGCGCUUCCUUCCUGUCGAGGAUCACCUUCUGGUGGAUCACAGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-110.50 kcal/mol

Ensemble Metrics

Free Energy: -116.77

Frequency: 0.0000

Diversity: 115.44

Structure Visualization

Structure Prediction

MFE Structure Prediction

((...((((((...(.(((((((..((((..((((((.((((((((..((((((...)))))).(((((((.....))))))).((((.....))))...((((((.....))))))....(((.((((..(............)..)))))))))))))))..((((((....((((.((((.(((((((((.....(((((((..((.(......).)).)))))))...)))).........)))))...))))..))))....)))).)).)))))).))))....))))))).)...)))))).))((...(((((.((......((((....))))........)).)))))....))

Thermodynamic Ensemble Prediction

((...((((((...,.(((((((.((((((.,,||||}|{,(((((.,(({{{{.,,)}})))}|,,(((({.....,,}}))}||,{.....||||{..((((({.....})))))...,||{.((((,,,,,,.,,,,,,,,,..}}}}))))))))||({{((((((...{(((,.,,||}|,,,||||,}}}}}|{||{||,,||.{..,.}.)}))})})))}}..{||||{........,,}||,.,}||,....|||...}))).,..})}}))))))}.,}.))))))).,...)))))).))((.{.(((((.({......((((....))))........}).)))))....))