Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_AC020571.3_0000100

Sequence Length

418 nt

GC Content

0.4809

CUUAUUUCUCUGCAGGUCUUUUCUGGAGUAGCCCAUAAUCUGAUUAAAAGCAUCUUCUAGUAAGUGAUCUCUUCGGAUAAUUAACUUUAACUUCCCUGGGCCUUGUCCAUAUCCUUUAGUCUCUAACUUCCUGUAAAAGUUCCUCAGUUUGGCUUCGAAAUCCCGCUUGUAAGGGGCUGGAGCCCGGGCAUUGGCACGCUGGGUACCUGGCGAGUUCUGAGGAGAUGACACGGGAGAGCCACGUGGGGACUGACAGUAGCUGGGGUGGAGUAAGGCAUGUGGAGGCACAUACGACAUUAUCUCUUCUUCAAAUAAGCUCAGCAACAUAACAAGGUCUGCAUCGCUUGAAAGGCGCACCAAUCCUGGAGUCCCUUCAGUUCGGAUAAAUUGGAUCUUCUCCCUGAGUGAGUGAUUCCUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-107.80 kcal/mol

Ensemble Metrics

Free Energy: -117.06

Frequency: 0.0000

Diversity: 133.30

Structure Visualization

Structure Prediction

MFE Structure Prediction

(..........)((((.....(((((((.((..(((...((((............)).))...)))..)))))))))....................(((((((((.........((((((((((..(((((((.....((((((((...(((((((...((((........)))).)))))))...((....)).((((((....))))))....)))))))).....))))))).......))))))))))..((.((((((.(((((.((((...(((..(.......)..)))....)))))))).....).)))))).))...)))))))))....(((((...)))))(((((.((..((((....(((((((......)))))))....))))..)).)).)))...))))

Thermodynamic Ensemble Prediction

(..........)(((({({{(((,((((.((.(((..((((((......{,.,{{{,,.|{,{{{|{{|,,.,,(({,.,............|||..(((((((((,........((((((((((.{(((((((.....((((((((.,,(((((({...((((........)))).}))))})|}}||....||.{{|{||,...)})))),),,)))))))).....))))))),,....,))))))))))..{{.((((((.{((((,(({{.{{(((..{.,,,,,.}..}}},},,)))}}}}}.....}.)))))).}}...}}}})))))}.,,||||||,,|||.|{.{{{...,}||,|}.})))}}}.))))))....)))..)}.))))..))).}}}.}}..))))