Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ACTN4_0000700

Sequence Length

520 nt

GC Content

0.5423

GGUGAGCUGGAAUGGUGGAUAAUGGGAGAGAGGUUCGUUUAGGAAAAUGAAAGUCUCAUUAGAAAGGGAAUGCGUAAUGGAUAGACUGAGAAAGGAAUUUGAGGAGGGGGUGCUGGCUCCUGGAGGUGCAGUCCCGGGACUGGAGAGCGUGUGUGUGUCGUGCAGGCAGAAUGAGUUUGGGGAGGAAGCGUUGAGAGUGUCCAGGAAGAAUUGUGUCUUUUUUGGAGAGACCGGAGGUAGGUGAAGGGAUCCUGAAGCAGAGACUGUGUUCAGGUGGCACUGUUUUUUUGGGGGGCGGGGGGGGCAACUUGGUAGGGCCCCACAGCAGUGAAAAGGUGAUCAGAAGUGGAGUGGGAUCCCCGAGCGAGGUGUCAGUGUCUGUGGGGGGGGGAUAAAUCCAGUGUGGUUGAGGGGGGAGCUCUGAGUGUGUGCAGGAAGAGCUAAAGAAAGGAGCGUGGUGAGUGGGUGUGUGUGGGGGGAAGGGGUUGUUCAGAAGUUUUGUGCGUGAAAUGGGUGGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-124.10 kcal/mol

Ensemble Metrics

Free Energy: -136.86

Frequency: 0.0000

Diversity: 149.86

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((.(.((((((((((......((....((.(((((.((((...........(((((.(((((((((((((......((((((..((.((.......(((.(((((..........))))).)))((....((((.(((((.(...((.((((((...)))))).))....).))))).))))....)).)).))..))))))......)))...)))))))))).)))))..........)))).)))))))....))...))))).))))).).)).((.((..(((.(.(.((((((.(((((((((.......((((((((((.(.(......(((((.(..((((......(((((..((.(((........)))))..))))).......)))).).)))))........((((((...((....))...))))))....................).).))).))))))).....))))))))).....)))))).).).))).....)).))

Thermodynamic Ensemble Prediction

,.{.,,((,,..,,,|...{{{({{{{.,,...(((((((....}))))))..))))}}}|........,,.{.,..{{,{{,..((.,,,......|||.||,,{,.,,{.{{.{|||{(.((,({,,..((((.(((((.{...{(.(((,((...,,,))).))....}.))))).))))....)).}}.}}.,|.((({{(((({......}))))}}}))}.}.||{.,,.,..,,}....,...((((({((((...)))).)))))),,})))),}|}}))},}}|,||,|,..(((((((((.......((((((((((.(.{.....,(((((..,.((((......(((((..{({({(......,.))}})..})))),..}...)))).).)))))........{(((((...({....}}...)))))}........,,}}........).).))).))))))).....))))))))).....}|||,|{|.|.....,.})}.}}}