Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ACTN4_0000900

Sequence Length

357 nt

GC Content

0.5490

AAUUGUGUCUUUUUUGGAGAGACCGGAGAGAUUGUGGACGGCAACGCAAAGAUGACCCUGGGAAUGAUCUGGACCAUCAUCCUUAGGUUCGCCAUCCAGGACAUCUCCGUGGAAGAGACCUCGGCCAAGGAAGGGCUCCUUCUCUGGUGCCAGAGAAAGACAGCCCCGUAUAAGAACGUCAAUGUGCAGAACUUCCACAUCAGGUAAGCGCCAGUCCUGGUCAUCCUCUCCUUUCCUCUAGGAACCUGAGAUCCUUCCUCCCACCUGCCCUGUUUGCUGUGUUUUUGUCGUGGUCUGUGAGAUGCCAGCCCUCAGUCAGCCCCUCCCUGGCCACGGGCCCUACAAGCCCAUGGGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-106.50 kcal/mol

Ensemble Metrics

Free Energy: -113.18

Frequency: 0.0000

Diversity: 118.74

Structure Visualization

Structure Prediction

MFE Structure Prediction

((..((.((.(((((((((.((..((((((.(((((........))))).((((((((((((.(((((.......))))).)))))).........((((((...(((.(((..((....))..))).))).((((((.(((((((....))))))).))..))))(((......)))...(((((.........)))))..(((....))).))))))))))))))))))..)))))))))))...)).))..))(.(((((.......((...(((.(((.....((((((((.(.(((..((..((.....))..))..))).).)))))))).....)))))).))))))).)

Thermodynamic Ensemble Prediction

{,..{{,(({((({{{|||,||,,((((({.((,(({{.{{{,,|,}||.(((((.{{((({..,,,{.,,,.,,}))))},}},})}),)}).}}||,||..}})))},(({{(.{{.{||{{|||||||.(((((,,(((((((....))))))).)..}))))(((......)))...{{(((..,....},)))}}.,(({..,.}}}.,}))))))},,,}}}}}}..}}))}})))),...))}}),,))|,{{{{{.,,.{,,,{...(((.{({.....((((((((.(.(((..((..((.....))..))..))).}.)))))))),,...))}))).}}})))}.)