Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_AMOTL1_0004000

Sequence Length

722 nt

GC Content

0.5208

UUUGAAAAAGAACUUCAGAGAAUUUCGGAAGCCUAUGAAAGUCUGGUCAAGUCUACCACCAAGCGAGAAUCGCUGGACAAGGCCAUGAGAAACAAAUUGGAAGGCGAGAUUAGAAGACUUCAUGAUUUCAACAGAGACCUCCGAGAUCGACUAGAGACUGCUAACAGGCAACUAUCCAGCAGGGAAUACGAAGGGCAUGAAGACAAAGCUGCAGAGGGGCAUUAUGCUUCCCAGAACAAAGAAUUCUUGAAGGAAAAGGAGAAAUUAGAAAUGGAGUUAGCAGCAGUGCGGACUGCAAGUGAGGACCAUCGGAGACACAUCGAGAUCCUGGACCAGGCUUUGAGCAACGCCCAGGCCAGGGUCAUCAAGCUGGAAGAGGAGUUACGAGAGAAGCAAGCAUAUGUUGAGAAAGUUGAGAAGCUGCAGCAGGCCCUGACCCAGCUGCAGUCUGCAUGUGAGAAGCGAGAACAGAUGGAGCGGAGACUGCGGACUUGGCUGGAGAGAGAGCUGGAUGCACUGAGAACCCAGCAGAAACAUGGAAAUGGCCAGCCAGCCAACAUGCCGGAAUACAAUGCCCCAGCCCUCCUGGAACUUGUGCGGGAGAAGGAGGAGCGGAUCCUGGCCCUGGAGGCCGACAUGACAAAGUGGGAGCAGAAGUACCUGGAGGAGAGCACCAUCCGACACUUUGCCAUGAAUGCCGCAGCCACUGCAGCAGCUGAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-201.10 kcal/mol

Ensemble Metrics

Free Energy: -216.86

Frequency: 0.0000

Diversity: 201.57

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((......)))((((((..(((((((....((..((....(((((((..((((.......(((((...)))))))))..))))).))....))....))....)))))))......(((((((.((((.........(((..((.....)).))).(((((...((....))....))))).......))))..))))))).....(((((((.((((((((.((((.((((..........(((((........)))))..........))).)..))))(((((....)))))..((.(((.((.((((.(...).))))((((((((.((.(((..........)))..)))))))))).....((((..((.......((......((((......))))......)).......)).)))).)).))).))(((((((.((((((((.((.....((.............))....))))))))))))))))).......(((((..(((.((.....((.(((......(((...(((....))).)))...))).))....)).))).))))).((((((.(.....).)))))).((((........))))((((.....))))..((((.(((((((((.((....)).))((((((......)).)))).))))))).))))))))))....)).)))))))..)))).))

Thermodynamic Ensemble Prediction

(((......)))((((((..,{(((((,,..{{,{({,,..(((((((..((((.{{,{{.{((((...))))))),,..,,}},.,,.........})).}}}),,)))),,,.,.|||||||.((((....}}},,{|||}}}}||..,,.,,..{((((...,|},,.,,.,|,}}}}}},....,,.,}|.}}}}}}}.....(((((((.((((((((.{((({((((..........(((((.......,)))),...,,.....))).|..,}}}{({{((((((((((..{{{....,,.|||{.....,.}}{{((((((((.((.(((.,......,.)))..)))))))))).}}.{(((((...(((.(({.,....,.}||..{{...{{{{{....,{{{....}))),}}}},|)))))...))))))))))))))))}||.....||..........,,.||{...,}|}|((.,{(((((((.......(((((...,.....,...))))).....{,({{..,,,.))),)))))))}...,)}}.,....,}))))))..{{((((({.,.....,.)))))).,}}|||,,,...)))|((({.,,..|||}..((((.(((((((((.((....)).)){(((((......)).)))}.))))))).))))..,))).},})}.)))))))..))))}))