Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ANKS1A_0000700

Sequence Length

250 nt

GC Content

0.4280

AUGCCCCCCUGGAUUCCCAGCAUUCUCCAGAUAUGGUCUCUAGGCCUGCUGUGUAGCUGAUUCCCUUCACCCCGUUUCCUGGAUACCCAUCUUCCUCUUUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCUGCUACCCUCUGCAUUUGGCAGCCUGGAAAGGAGAUGCCCAGAUAGUGCGGUUGCUCAUCCAUCAAGGGCCUUCACACACCAGAGUCAAUGAACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-44.20 kcal/mol

Ensemble Metrics

Free Energy: -48.08

Frequency: 0.0018

Diversity: 65.67

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.....(((....)))))))(.((..(((.((((....((((((..((.(((((((....(..((....(((((((((((.........))).......................................................(((((((((...........)))))))))....))))))))....))..)..))))))).))........))))))......))))..)))...))...)

Thermodynamic Ensemble Prediction

({((,...{(((....}}}}}},,.{||{({{.{(((.{,,((({{({.{({({{(,{(,....||,|,...{|{{{||||{|...}.,...,,,.......................................................(((((((((...........)))))))))|||.,}|||,,|{{{{,,..,}},))),}),)}}},.....))))}},,,.,,}}}}..))}..,),..,)