Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ANKS1A_0001200

Sequence Length

301 nt

GC Content

0.5083

CAUGUGGAGAGGGCCAAAUGUGAACUGUGUUGACAGCACUGGCUACACACCCCUGCACCAUGCUGCUUUGAAUGGCCAUAAGGAUGUGGUCGAGGUUCUUCUGAGGAACGAUGCGCUGACCAACGUGGCUGACUCAAAAGGCUGCUACCCUCUGCAUUUGGCAGCCUGGAAAGGAGAUGCCCAGAUAGUGCGGUUGCUCAUCCAUCAAGGGCCUUCACACACCAGAGUCAAUGAACAGAAUGCUCUUGAGAUCAAAGAACUCAAAAAGUACGGCCCCUUUGACCCUUAUAUCAAUGCCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-80.70 kcal/mol

Ensemble Metrics

Free Energy: -87.82

Frequency: 0.0000

Diversity: 91.23

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((.((.(((.....((((..(.(((((...))))).)..))))..))))).)).))))((((.((((..(((((((....)))))))(((((((((.((((.(((..(((((((......(.(((...(((...(((((((((...........)))))))))......)))..))))...)))))))))).))))......)))))))))........((.(((((.........((((.(((((.((...)).)))))..))))........))))).))....)))).))..))

Thermodynamic Ensemble Prediction

((((((.((.(((,,,..{(((..(,(({{,.,,))))),)},,.}}..))))).))}})))((((.((((.,(((((({..,.|||||||{{{(((({{.,{{|}|||,,{({(({{,|,..,|,(((...(({...(((((((((...........)))))))))......||}..}}}|,..,,}))})))}.)))}}},.{{{|(((({|{,.......,{,{{,,.,,.....,.||||}|((((.((...)).)))),..,}},.))))),,}))},,,.....)))).))..))