Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ANKS1A_0007800

Sequence Length

474 nt

GC Content

0.5506

AUUGAGAAAAUCAUGAGUUCUAUUGGAGAAGGGAUUGACUUUUCUCAGGAACGGCAGAAGAUCUCAGAACGUCAUUGCAGAGCACGAGAUCCGGAACAUUUCCUGUGCGGCCCAGGACCCGGAGGACCUCUGUACCUUUGCCUACAUCACCAAGGACCUGCAGACCAGCCACCACUAUUGCCAUGUGUUCAGCACCGUGGAUGUGAACCUGACCUACGAGAUCAUCCUGACGCUGGGGCAGGCCUUCGAAGUGGCCUAUCAGUUGGCCCUGCAGGCCCAGAAGUCCAGGGCGACGGGCGCCUCUGCAGCUGAGAUGAUUGAAACAAAAUCUUCCAAACCGGUGCCUAAGCCUCGGGUCGGCGUGAGGAAAUCCGCACUGGAACCACCUGAUAUGGACCAAGAUGCCCAAUCCCAUGCCAGUGUCUCCUGGGUUGUGGACCCCAAACCAGACUCUAAGCGGAGCCUCAGCACCAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-137.30 kcal/mol

Ensemble Metrics

Free Energy: -148.53

Frequency: 0.0000

Diversity: 176.01

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((....((.((.(((((...(((((((.......)))))))..)))))..)))).((((((......((......))....)))))).((((...))))...(((((((((((((((..((((.((((.....................((.(((((((.((((((((.......(((.(((..(((((..((.(((((.....((........))..)))))))..))))).)))))).......)))))........)))..))))))))))))).)))).((((...(((((((........((.((.((((.......)))).))))....)))))))..))))))))))((((((.(((.....(((((((..(((.......))).)).)).)))....)))))))))........)))))))))((........))...((((....)))).)))))......

Thermodynamic Ensemble Prediction

.{(((({...{{.{{.(((((..,{(((((({{.....)))))))}})))))..}}},.{{||||,|....{,..,{{.||{,.,|}}}}}.(({,...})))|||{|(({(({{(((((({.((((.({((,.,{,,,{...........,,((.(((((((.(((((,,,{{{....{((.(((,{{((((..({.(((((.....{{........}}..)))))))..)))))}))}|||{......},))}}.....}})))..))))))),})}}}.)}}}.|(((...{((((((.,,,..,.{({((,{{((.......}))),)},,....))))))}..))))})))}}((((((.(({.....((({(((..{((.......|)).}},.}.)))....)))))))))}}.},,},)}}}}}},}||..,,},..}},}.||||....)))),)))})}.,...