Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_AP001442.2_0000400

Sequence Length

305 nt

GC Content

0.5049

GAGCUCCACGGUGGUUUUCGUUUCGGUCAAAGAUGGCAUGAGAGCAUCGUUUCCGUAACUGAUCCUUGGUUCACUAAUCAUGUUGGCCAAGACGUCAUCUGAAUAGUUUUGCUCUUUCUGAAGCAGCUCAUCUCCCAUCUGCAUAGUCUGUGUCUGCUCCGCCCCACCAGACAUCCGAGUCAUCCUCCUCCGCAUCAGCAGAAUCCACAUUGUCACUUUCUUCAGCCAGUGGGCAACACACAAACUCUACCCCUCGGAACUUGUCAAUUCCGCAGGGCAGCAACAUGCCGUAGUCAUGCAAGUUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-64.20 kcal/mol

Ensemble Metrics

Free Energy: -70.94

Frequency: 0.0000

Diversity: 101.45

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((...(((.((.......(((((....((((((...((((((...(((.....)))((((.(((((((.((.......)).)))))))..))))............(((((.....).)))))))).))..)))))).....(((((.((..((...))...)))))))..))))).......)).)))....)))....))((..((((.(((.......(((....)))................(((((((((........))))).))))..(((...)))...)))...))))..))

Thermodynamic Ensemble Prediction

((({,..{((({((,,{{,{{,{(((....,{{{{{,,,||||{||,|||{,,...,..((((.(((((((.((.......)).)))))))..))))...},...|,..{||||.....},}|}||}}}.,,..},}|}|||...((((({({,,({...}}...},))))),.,,|||.,.....,}.)}}....,)).}}.,}||,.,||,..,...,,.,,|,,.||})}}....,...........(((((((((........))))).)))),,{{,.,.||}.|,,,...}))},)}))