Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_APP_0003300

Sequence Length

356 nt

GC Content

0.5056

UUCCUACAACAGCAGCCAGUACCCCUGAUGCCGUUGACAAGUAUCUCGAGACACCUGGGGAUGAGAAUGAACAUGCCCAUUUCCAGAAAGCCAAAGAGAGGCUUGAGGCCAAGCACCGAGAGAGAAUGUCCCAGAUGAGCUGCUUCAGAAAGAGCAAAACUAUUCAGAUGACGUCUUGGCCAACAUGAUUAGUGAACCAAGGAUCAGUUACGGAAACGAUGCUCUCAUGCCAUCUUUGACCGAAACGAAAACCACCGUGGAGCUCCUUCCCGUGAAUGGAGAGUUCAGCCUGGACGAUCUCCAGCCGUGGCAUUCUUUUGGGGCUGACUCUGUGCCAGCCAACACAGAAAACGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-89.50 kcal/mol

Ensemble Metrics

Free Energy: -96.83

Frequency: 0.0000

Diversity: 124.76

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((..((((.(((..(((.....))).))).)))).(((((.((((.......(((((((((..............))))))))).........)))).))))).(((((((............(((((...((..((.(((((......)))))...))..))....))))))))))))....(((((..((...))..)))))(((.(((.((.(((((......).)))).))..))).)))(((..((((.((((((.((..(((..(((((.....)))))....))).)).))))).).))))..)))....))))((...((((((........))))))......))

Thermodynamic Ensemble Prediction

{{,,..((((.(((..(((.....))).))).)))).{{{{{.((((,.,....(((((((((.{.......,,.},)))))))))...,{,...}}}},))))}.{({,,,({.{,,,{,({{{,((((,,,({,{((,(((((......))))}...}}..}}...,||,,|{{{{{...{(.,.....)),..})))}),}}},(({(((.{{.((,(({{.{{,|..,}}{||,.,,,.,,}|}|...,,.}|}||||}||.}|,}}}}}}.|||||||||||..,}))))}.}))))},|,}})),,})),}})))))||,.,|{{{{|...,,,..}}}})}.......}