Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_APP_0009500

Sequence Length

371 nt

GC Content

0.5472

UGAAGACAAAGUAGUAGAAGUAGCAGAGGAGGAAGAAGUGGCUGAGGUGGAAGAAGAAGAAGCCGAUGAUGACGAGGACGAUGAGGAUGGUGAUGAGGUAGAGGAAGAGGCUGAGGAACCCUACGAAGAAGCCACAGAGAGAACCACCAGCAUUGCCACCACCACCACCACCACCACAGAGUCUGUGGAAGAGGUGGUUCGAGAGGUGUGCUCUGAACAAGCCGAGACGGGGCCGUGCCGAGCAAUGAUCUCCCGCUGGUACUUUGAUGUGACUGAAGGGAAGUGUGCCCCAUUCUUUUACGGCGGAUGUGGCGGCAACCGGAACAACUUUGACACAGAAGAGUACUGCAUGGCCGUGUGUGGCAGCGCCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-97.50 kcal/mol

Ensemble Metrics

Free Energy: -105.16

Frequency: 0.0000

Diversity: 123.12

Structure Visualization

Structure Prediction

MFE Structure Prediction

(............((.......)).............)((((...(((((............((...........)).......((.((((((((.(((...((......(((.((....((....))...)).)))......)))))..)))))))))).)))))((((((.((((((...))))))....))))))((.((((.....))))))....(((.(.(((.((((((((..(((...........)))((((((((..((((.(.((((.....(((((((((((((........))).)))).))))..))......))))).))))..)))))))))))))))).))).))))...))))

Thermodynamic Ensemble Prediction

(,....{....,.{{.,,,,{{.{,,.{{.,,.....|((((,..(((((...........,{(..,.....|,.||.{.....|{.((((,|{{.{((...,,....{{{(,.{,...,}}.,.....,))).},.......)))))..))}})))))},}}{{((((.(,.((((((...))))))..,.)))))),,.{(({...,,|||}|,|{..(((...,{{.|||{||{|.}|||,....,}}},,,))|{||||||..((((,..(((({{....,{{{|||{|||{.,,,,..,||},||}}.}))).})}...,.,))))}.}}}}..)))))}))}))||||}.|||.}})),..))))