Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_APP_0009900

Sequence Length

250 nt

GC Content

0.3640

GUAUUUUAAGCCUUGUGGGAGUUCUUCUGUUAAGUGAACAGAUAGAGACACUGAUACAGAUGGCUCUUUCACCGUCUCAUGUGAUGAUAAAAGCUAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAUCUUGAACUGCUGACCUCAAGUGAUCCAUCCAUCUCGGCCUCCCAAAGUGCUGGGUUUACAGGCAUGAGCCACCAAGCCCGGCUGGUCUCAUUUUAAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-43.90 kcal/mol

Ensemble Metrics

Free Energy: -47.13

Frequency: 0.0053

Diversity: 41.52

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.....((((((.((((((((((((((((.....)))))).))))...((((....(((((.((......((((......))))...................................................................(((((..........))))).)).)))))....)))).))))))))).))).....)))(...((((((((((......)).))).))))).....)

Thermodynamic Ensemble Prediction

(((.....((((((.(((((({(((((((((.....)))))).)))}...((({...,(((((.{,..{,,,((((......))))...................................................................(((((..........))))),)).},,,),,,,)))).))))))))).)))..,..)))(...((((((((((......)).))).))))).....)