Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_APP_0011900

Sequence Length

291 nt

GC Content

0.5189

UGAUGCCCUUCUCGUUCCUGACAAGUGCAAAUUCUUACACCAGGAGAGGAUGGAUGUUUGCGAAACUCAUCUUCACUGGCACACCGUCGCCAAAGAGACAUGCAGUGAGAAGAGUACCAACUUGCAUGACUACGGCAUGUUGCUGCCCUGCGGAAUUGACAAGUUCCGAGGGGUAGAGUUUGUGUGUUGCCCACUGGCUGAAGAAAGUGACAAUGUGGAUUCUGCUGAUGCGGAGGAGGAUGACUCGGAUGUCUGGUGGGGCGGAGCAGACACAGACUAUGCAGAUGGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-91.70 kcal/mol

Ensemble Metrics

Free Energy: -97.33

Frequency: 0.0001

Diversity: 76.18

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((.(((((((((((....(((..........))))))))((((((((..((((...))))))))))))..((((........))))....((((((((((.(...((((....))))...).)))...))))))).(((((((.(((((((....))))))).)))))))(((((((((.(((((((((.(((......))).)....)))).((((((....))))))(((.....)))....((((....))))...)))))))))))))))).))).)))..

Thermodynamic Ensemble Prediction

.....({(,(((({{{{(((..,,({{,,....,|}.},||||}}((((((({..((({...,)))}))))))).,|||{,....{{,}}},....{{((((({((.{,..{{{{....})}),,.}.}))...))))))).(((((((.(((((((....))))))).)))))))(((((((((.(((((((((.(((......))).|....}}}}.{(((((....)))))}(((.....)))....{||{|...))})),.)))}))))))))).,),))),))),,