Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ASTN1_0005100

Sequence Length

392 nt

GC Content

0.3827

GGUGACACUCUUUCUUCAAGGUACUCAAGGAAGAAUAGCCCAUUAAUAACAUCACUAAGAGGCUGUAAGUUUGUGUUUAUUGAGAGUGACCUUGGACAACUAACUUAACUUCUCAGAGCCUCAGUUUUUCCAUUAGUAAGAAGGAGACAGCACACGACUAUCACAAUGUCUGGCACAGAGAUGGCACUCAAUAUUUGGCUGUUCCUGCCCCUUAAUGAUUUAGUCACCCUGAUACUGUUCCUUCUGGUAAAGAAGAAAUAAGCAUUAUCUGCCUGAGAGAAAUUGAAACUUAAAUACUGAACACAAAUCAGUUAAAUGAGACAGAAAAAUCAAUGUUAUCAGGUAUGUGGGCUGAGUCAAUUACUGCAACCAUUAAAGAGAGUAAAAAUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-83.00 kcal/mol

Ensemble Metrics

Free Energy: -90.87

Frequency: 0.0000

Diversity: 95.35

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((.((((((((......((((...((((((((((((..(((..........)))..))))))....(((.((((..(((((((....((((....))))....)).)))))))))..))).))))))...))))))))))))...((.((.(((.........))))))).(((.((((((.(.........))))))).)))...............))))))(((((..((((.(((((.....))))).))))(((.((((.(((((((.....(((((..((((...(((((.......)))))....)))).........)))))....))))))).))))))).......(((((...............)))))..)))))

Thermodynamic Ensemble Prediction

((((((.,((((((((......,,|.}}||||||((((((..{{{..........}}},.))))}},{{,{,(.((({..(((((({....{{({....))))....)),,))))}))),,),},}}},,|{{{||,,,},|||||,{{((.{{.({(........,}|}||||.|||,{|||||..........,}))))))})),....,}}}}}.....))))))(((((,,(,((.((({(,,,..||}}}.,,,.(((.{(((.(((((((.....(((((..((((...(((((.......)))))....)))).........)))))....))))))).)))})))...,...||{||...,}},.....},.)))}...)))))