Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ASTN1_0006700

Sequence Length

445 nt

GC Content

0.4270

GUGGAUGUGGUGGUGAAAGCUUUGCAUCUUGAUUACCUCUGUUUUCUCAGUUAUUGAGGAAGCACAUCAUGUGCUGAGGGAGAAGAUUGGGGAGGAGGUGUCAGAGGUUUGAGAGAAAGAAGGUAUGAAAAGGUGAUCUGGAGAAAGGGAGAGUGAAUGAACGAGGAAAAUGUGGUUUGAUCACUGGGCAGUAUUCAAGAGCCCACUUGAGGUUAGCGGUCAGGGAUUUUAAAUGAAAGUAAUCAGUGUGGUGGCCAACUGCAUUCAUCUGUGCAAACGCAGAAAUGGAGCCACAGGGUCAUUGAGUUUAACCAGUGUUGGAGUGUUUCAGACAAGUAUGAUGAAGUGAUAGAGGAGCGUGGGAGUUGAGGUUACAUGAAAGGGAAUGAUUACAAUAAUGAAUGACAUAAUUUAAUGUGAAGAAAGAAGGAAGAACAUACAUGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-92.40 kcal/mol

Ensemble Metrics

Free Energy: -102.99

Frequency: 0.0000

Diversity: 142.81

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((..(((...........(((((((((((....((((((((((((((((((.((.....((((((...))))))......)).)))))))))))......)))))))....)))..((((....(((...(.((((((.(((........(((((.(((((.(........).))))).)))))((((...........)))).))).)))))).)..)))....))))........(((((((.....((((((..((.((((..((((((....)))))))))).))((((...((((((..(((..((..((.(((((....)))))))..))..)))..))))))........)))).......))))))...........))))))).....(((((......)))))))))))))............)))..)))...

Thermodynamic Ensemble Prediction

{(({(((((((({(.{,,,(((({{{((((,,..{((((({{((((((((((.{{.....((((({...})))))....,,)),)))})))))})))))),)))))})}}.,,,...,{{{,...(((...(.((((((.(((........(((((.(((((.(........).))))).)))))((((..,.....,..)))).))).)))))).)..)))....)))}........{{{{|||.,,,.{|,|||,,}|}|}||}}|(((((....})))}}.,||{||{{|{...{{((((,.{{{..,|},,||{|,{,,,,,)))},,||.||,{|,}..,|||||.....,{(.,....}}}...})}}),|.........}}}}}}}.....{{{{{.,,,,.}}}},}))),,...............)))}),}.,,