Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0000900

Sequence Length

250 nt

GC Content

0.3280

UCAUCUCAUAGUUAUUAAAACAGCGUGAUACCUGCAUAAAAACAGACAAAUUGACCCAUGGAACAGGAUAGAGAGCCCAGAAAUAAAUUCACCUGUCUGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGUGAUAUUCCUUACUGUAAAGCCAAUUGCGGCAGUCCAGAUCACGGUUACUGUGACCUGACUGGAGAAAAAUUAUGUGUCUGCAAUGAUAGUUGGCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-30.60 kcal/mol

Ensemble Metrics

Free Energy: -35.09

Frequency: 0.0007

Diversity: 66.25

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((.(((........)))))))..............((((((((((......(((...............)))......))))....))))))....................................................((((......))))......(((((((((((((((((((.(((.(((((...)))))))))))))..............))))..)).))))))))...

Thermodynamic Ensemble Prediction

{{(,.,{,{,(((......,|,|,||}},.,|||,.......((((((,,,{......,{{..,,{{...,.....},,........})}..,))))))....................................................((((......})))......(((,,{{||}||{{(((((.(((.(((({...)))))))))))))......,,,,.}}.}})|,,|,.},))))))..)