Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0001100

Sequence Length

739 nt

GC Content

0.3369

UCAUCUCAUAGUUAUUAAAACAGCGUGAUACCUGCAUAAAAACAGACAAAUUGACCCAUGGAACAGGAUAGAGAGCCCAGAAAUAAAUUCACCUGUCUGCUGUCCACUGAUUUUCAACAGAGGCUCGAGGAAUACACAUUGGAGAAAGGACAGUCUUGUCAAUAAGUGAUUCUAAAAAACUAGGUAUCCAGAUAUAGAAGAAUGAAAUUAAACCCUUAUCUGAUCCCUUAUAGAAGAAUCAACUCAAAAUGGAUUAAAGAUUUAAAUGGAAGAUCUGAAACUAAAACAACUAGAAGGAAACAUAGGAGAAAAGCUAUGACUUUGGUCUGAGCAAUGACUUCUUGCAUGAUUCCAAAAGCACAGACAGCAAAAGCAAAAAUAGACAAAUGGUAUUGAAUCAAGAAGCUUCUAUACAUCAAAGGAAAUAACAGAGUGAAGAGACAACCUACACAUUGAGAGAAAAUAUUUGCAAAUCAUACAUCAGAUAAGGGACUCAUACCCAAGACAUAAAAUGAACUCAAAUCAUUCAAUAACAAGAAAACAAAUAACCCCUAUUUAAACAUGGGCAAAUAAUCUGAAUAGACAUUUUUCAAAAGAAAACAUACAAAAGGUCAAAACAUAUAUGAAAACAUGCUCAACAUUACUAAUCAUCAGGGAAAUGCAGAUCAAAACCACAAUGGGAUGUCAUCUCAUACCUCUUAAAAUGGCUCUUAUAAAAAAGAUGAAAGAUAACGUGUUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-110.30 kcal/mol

Ensemble Metrics

Free Energy: -126.28

Frequency: 0.0000

Diversity: 168.65

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((((((.((..........((((....((((........((((....(((.((((((.....((((((........(((.....)))..((((((..(.((((.((...(((..(........)..)))....)).)))).)..))))))((((((......(.(((((((......)))).))))..........((((((.......((((((((((((.(((((((((((..((.........(((.((..((((((.......))))))..)))))............((((.((((((((....(((..(((....)))..))).....)))))...))).)))).............((....)).............((((.....)))).))..))))))))......)))......(((.(((.((.......)).))).)))........................))))))))))))..((((..............)))).......))))))....)))))).............))))))...)))))))))....))))....(((((((((((...........((.....))...........)))))).))).))...............))))...))))...........)).)))))))).((...(((...((((....(.(.((((......))))).)))))....))).))

Thermodynamic Ensemble Prediction

{((((({{{.(({.,......,{{{({,,.,((({{{.....((((....(((.((((((.....((((((.{......{{,.....}}}..((((((..(.((((.((...(((..{.{....,,}..)))....}}.)))).)..))))))((((((.....,{{(((((({......|}||.,,},,..,.,.,..{{{{{,.......((((((((((((.(((((((((((..((...,,....,{{.,,..((((((.......))))))..,.|||.......,....((((.((({{(((,,..(((..(((....)))..))).....}))))}..))).))))....,,.......{{....)).............,|||.,,,.,}},.))..)))))))}......)))......(((.(((.((.,.....)).))).)))...........,,...........))))))))))))..{{,,..............}}}}......,))))),....)))))).............))))))...)))))))))....))))....{{{.,(((((....}}}},..........}},.........,||,...,}}}.},...............,,}},..))))}},},,.....,..||||||||.,|}}}}}}..,,,,.....,}},||||......,)))))}.,||{,..,}}}),