Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0011200

Sequence Length

250 nt

GC Content

0.3520

UUCUUCAUGUGGAAGACGAGAACUGCAGCUAUGAAAUGGGGAAGUCAAGGAAGAAUCCUGGCCUGGAUGGAUUGCAAUUGGAGGUAUCAGUAUGAGUUUANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAUGUGUGCGAACAGUGUAAAAAUCUCACCACAGGAAAGCAGUGUCAAGAUUGUAUGCCAGGUUAUUAUGGAGAUCCAACCAAUGGUGGACAGUGCACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-34.80 kcal/mol

Ensemble Metrics

Free Energy: -40.32

Frequency: 0.0001

Diversity: 80.25

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(((.(((((.((((..(.((((..(((.(.((.((.((..(((.(((.((....))..))).)))...)).)).)).).)))..)))).)..)))).....................................................(((......)))..............))))).)))))(.((((....(((((..(((((((.....(((....))))))..))))..))))))))).)

Thermodynamic Ensemble Prediction

(({(((.,{{,|,,}}{,,|,{((({,(((((....{{{({,..((.,{{{....,|||||||{{{,|{{{{{|||{(((...{{{{||,,.............................................................}},}}}}...))})}},...,)),},})}))}},..|({((,,....|||||..|||||||,....,{|,..}))},)).,)))),}}))))}},}.)