Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0014700

Sequence Length

250 nt

GC Content

0.3040

GACUAUUUUGAAAGAAAGUGGGUUUGCCAGAUACCUUCAUUCAGCUGUUCUUAUCAAUGGAGCUAUGCUUAUUUUUGGAGGAAAUACCCAUAAUGACACUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACUCUCUCUGGAAUGUGAUAGUAUUUUAAAAUUUAUUGUAUUAUCCAGGGGAUAAAAGCUCCCAGAGGCUUCCACUGUGAGAACCAAAGACCAAAUGUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-33.60 kcal/mol

Ensemble Metrics

Free Energy: -39.32

Frequency: 0.0001

Diversity: 60.26

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.((...(((((.(((...((..((....))..))))).)))))..(((((((.((.((((((..((.(((((..(((.(......)))).)))))))..........................................................((((((..((.((((((((..(((...)))..))))))))))(((........))))))))))).)))).)))))))))...)).)((....))

Thermodynamic Ensemble Prediction

(.({...{(({{.(({.{{(({,...,,..,.,)})}).)))},..(((((((.((.(((((({.,{.{((((..(((.(......)))).))}}},.........................................................,,({(((({.{(.,((((((,.........))}})),,}})))))||||......|}})}}}})))}}))).)))))))))...)).)((....))