Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0016100

Sequence Length

337 nt

GC Content

0.4095

CUUGUGAUGAAUGGAAAAUACUACCAAAACCAAAUCUUCAUAGAGAUGUCAACAGAUUUGGACACUCUGCAGUAGUCAUUAACGGCUGCUUCUGAUGACAGAUGUUACAGAUAUGCAGAUUGUGCCAGCUGUACUGCCAAUACAAAUGGGUGCCAAUGGUGUGAUGACAAGAAAUGCAUUUCGGCAAAUAGUAACUGCAGUAUGUCUGUCAAGAACUACACCAAAUGUCAUGUGAGAAAUGAGCAGAUUUGUAACAAACUUACCAGCUGUAAAAGCUGUUCACUAAACUUGAAUUGCCAGUGGGAUCAGAGACAGCAAGAAUGCCAGGCUUUACCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-71.60 kcal/mol

Ensemble Metrics

Free Energy: -79.88

Frequency: 0.0000

Diversity: 106.13

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.......(((.........)))...((((((((.....((....))...))))))))...(((((.(((((((......)))))))((((....))))((((((((((.(((.....(((((...((((.......))))....)))))...(((((((.(((((.((..((((.(((........).)).)))).....))))))).....)))))))....((((.......))))))).)))))))))).......(((((.....)))))((((((..............))))))..)))))...(((....)))))))((.....))

Thermodynamic Ensemble Prediction

((((,,,.,..(((.........}},...{{{{{{({,,,{,{{,.||||...}}}}})))|||||{{({(((((((......))))))}((((.{,,|,,.,||||||||,.{||,,|.|||{{{{,,((({.,,,,..}}}}..}}}|||},,.(((((((.(((({,((..((((.,.{.,,.....),,,.)))).....))))))).....)))))))..,,{({{.,,,...}}},}}}.}}})))}})}.....,,(((((.....))))),{{{,,.....|},,,,,,,}})}},,,))}}},,,||,....)))))))((.....))