Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0019300

Sequence Length

370 nt

GC Content

0.3595

UCUGUCAAGAACUACACCAAAUGUCAUGUGAGAAAUGAGCAGAUUUGUAACAAACUUACCAGCUGUAAAAGCUGUUCACUAAACUUGAAUUGCCAGUGGGAUCAGAGACAGCAAGAAUGCCAGGCUUUACCAGUCGAACAAAAAUCUGGAUAUAUCAAUUAAUGCAUCAAACAACUUUAAUCUCAACAUUACGUGGUCUGUCGGUUCAACAGCUGGAACAAUAUCUGGGGAAGAGACUUCUAUAGUUUCCAAGAAUAAUAUAAAGGAAUACAGAGAUAGUUUUUCCUAUGAAAAAUUUAACUUUAGAAGCAAUCCUAACAUUACAUUCUAUGUGUACGUCAGCAACUUUUCCUGGCCUAUUAAAAUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-60.00 kcal/mol

Ensemble Metrics

Free Energy: -68.90

Frequency: 0.0000

Diversity: 89.83

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((...((((((((....((((.((((((((...((((((((((((((.....))))(((((.....))))).........(((..(((.(....).)))..)))...(((....)))..((((.....))))......)))))))(((.(((......))).)))......)))...)))).)))).))))....))).))))).))))(((....((((..(.((((((((.((((((.((((.....((((.......(((((.((.......))..))))).......)))))))).))))))............(((((.....))))).........)))))))).)..))))......)))

Thermodynamic Ensemble Prediction

.((((...((((((((((,.,(((.((((((((...(((((({(((({,,.....,,,,(((((.....))))),{{,......,||,,..{{{,,|||,{{,.,.,...{|..,..},)},||},...,,}}},......,}}))))|{{.{,{......,}}.}})......)))...)))),,))).)))))),.})).))))).))))(((....{{{{..{.((((((((.((((((.(((({{{..,,.........,||||.,,......,|||||||}}..},,,,})},}))).)))))).....,,.{,..{((((.....))))}.||.,|...)))))))).)..}))}......)))