Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0022000

Sequence Length

236 nt

GC Content

0.4153

CUUGCCAGUGUAAUGGACAUAGCACUUGCAUCAAUAAUAAUGUGUGCGAACAGUGUAAAAAUCUCACCACAGGAAAGCAGUGUCAAGAUUGUAUGCCAGGUUAUUAUGGAGAUCCAACCAAUGGUGGACAGUGCACAGCUUGUACAUGCAGUGGCCAUGCAAAUAUCUGUCAUCUGCACACAGGAAAAUGUUUCUGCACAACUAAAGGAAUAAAAGGUGACCAAUGCCAAUUGUAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-46.70 kcal/mol

Ensemble Metrics

Free Energy: -51.72

Frequency: 0.0003

Diversity: 87.25

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((....(((((..((((((.((((..((((........)))))))).....(((((....((.(((((..((...(((((......)))))...)).(((.....(((....))))))..)))))))...)))))..(((((...(((((((((.............)))).))))).)))))...)))))).))))).....)))..((((..(((.......)))..))))..

Thermodynamic Ensemble Prediction

,,,(({(,(((,,((.,({.{((,,,{{({({.{(((((((.((,(((.(({((,{.....{({,,{({,.{|...||,||}...,.))))).}}))}.))}}}}}},|...{||||||...))))))..}))))..)})))}.)))|||,||||..{({{,.,{,..||||{||}},..{{{{,...||||||}}.........}),.|||..}|||}}}..,}),,..)))),.