Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0022700

Sequence Length

479 nt

GC Content

0.3570

CUUGUACAUGCAGUGGCCAUGCAAAUAUCUGUCAUCUGCACACAGGAAAAUGUUUCUGCACAACUAAAGGAAUAAAAGGUGACCAAUGCCAAUUAUGUGACUCUGAAAAUCGCUAUGUUGGUAAUCCACUUAGAGGAACAUGUUAUUACAGCCUUUUGAUUGAUUAUCAAUUUACCUUCAGCUUAUUACAGGAAGAUGAUCGCCACCAUACUGCCAUAAACUUUAUAGCAAACCCAGAACAGUCGAACAAAAAUCUGGAUAUAUCAAUUAAUGCAUCAAACAACUUUAAUCUCAACAUUACGUGGUCUGUCGGUUCAACAGCUGGAACAAUAUCUGGGGAAGAGACUUCUAUAGUUUCCAAGAAUAAUAUAAAGGAAUACAGAGAUAGUUUUUCCUAUGAAAAAUUUAACUUUAGAAGCAAUCCUAACAUUACAUUCUAUGUGUACGUCAGCAACUUUUCCUGGCCUAUUAAAAUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-81.50 kcal/mol

Ensemble Metrics

Free Energy: -90.18

Frequency: 0.0000

Diversity: 145.28

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((........(((((.(.(((...(((.(...((((((.((((.((((((..(((....((((((........(((((.((...((.....(((((..(((((....(.((.((((((((((...(((((((....(((....)))..)))))))..)))))))))).)).))))))....)))))))....)).))))).......(((.((((...)))).)))..((((((.(((............)))((((.((((..(((((......................)))))..)))).)))).((((........))))....))))))...((((((.....))))))..............(((((.((.......))..))))).............))))))..))).....))))))...)))).)))))).).)))....))).).)))))........)))).

Thermodynamic Ensemble Prediction

..{(((..,,,{{,(((((.{.{{{...{((,|,..{(((((.((((,((((((..(({....((((((.......,(((({.,{.,,((,,,..{((((..{({{,..,,|,,,.||||||{{{{,,.||{((((..,.(((....))),}))))}}|,,||}}}))))).,,.,|||||.,..},,,}}},,,.}},}}||}.......(((.((({...}))).)))..{(((((.,,{...........,)))|{{{.{{{{..(((((......................))))).,)))).}))).{{{{....,,,,))}}....}}}}||{,,((({(({((..,||{{{{..............)}}}..,..}}}.}})}}))))}..}}...,,,,..))))))..))}.....)))))}...)))).)))))).).))).,..}))}),)))))........)))}.