Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0024200

Sequence Length

385 nt

GC Content

0.3455

AUGUGACUCUGAAAAUCGCUAUGUUGGUAAUCCACUUAGAGGAACAUGUUAUUACAGCCUUUUGAUUGAUUAUCAAUUUACCUUCAGCUUAUUACAGGAAGAUGAUCGCCACCAUACUGCCAUAAACUUUAUAGCAAACCCAGAACAGUCGAACAAAAAUCUGGAUAUAUCAAUUAAUGCAUCAAACAACUUUAAUCUCAACAUUACGUGGUCUGUCGGUUCAACAGCUGGAACAAUAUCUGGGGAAGAGACUUCUAUAGUUUCCAAGAAUAAUAUAAAGGAAUACAGAGAUAGUUUUUCCUAUGAAAAAUUUAACUUUAGAAGCAAUCCUAACAUUACAUUCUAUGUGUACGUCAGCAACUUUUCCUGGCCUAUUAAAAUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-56.30 kcal/mol

Ensemble Metrics

Free Energy: -65.09

Frequency: 0.0000

Diversity: 108.51

Structure Visualization

Structure Prediction

MFE Structure Prediction

(......)(((......(((..((((((((((...(((((((....(((....)))..)))))))..))))))))))........)))......((((((((((((...(((.....(((.((((...)))).)))..((((((.(((............)))((((.((((..(((((......................)))))..)))).)))).((((........))))....))))))...((((((.....))))))..(((((.......((((....((((..((((((((....))))))))...))))........))))........)))))..)))...)))).....)))))))).............)))

Thermodynamic Ensemble Prediction

({((,..,{{{......{.{{.((((((((((.,.{{(((((....(((....))).,))))})}..)))))))))).},..{{{{{{{.....,.,({{{,{({{,((,{,.....(((.((({...}))).)))...(((((...............))))).,........{(({{......................}}}}}.))))),,))),||||...}}}}})).,.,,,){||((({,{{(,(((((,.{{{({{{.............,||||..,..}},.||||||||}}..}},,,}}}.,,}},|||}}}...},)).,..,{{{{{...,,))}||.(((((.,....,}.))))).,,........)))