Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0025400

Sequence Length

358 nt

GC Content

0.3464

GAUUGUACUUUUUUUCCUCCCUACAGACAGCCUUUUGAUUGAUUAUCAAUUUACCUUCAGCUUAUUACAGGAAGAUGAUCGCCACCAUACUGCCAUAAACUUUAUAGCAAACCCAGAACAGUCGAACAAAAAUCUGGAUAUAUCAAUUAAUGCAUCAAACAACUUUAAUCUCAACAUUACGUGGUCUGUCGGUUCAACAGCUGGAACAAUAUCUGGGGAAGAGACUUCUAUAGUUUCCAAGAAUAAUAUAAAGGAAUACAGAGAUAGUUUUUCCUAUGAAAAAUUUAACUUUAGAAGCAAUCCUAACAUUACAUUCUAUGUGUACGUCAGCAACUUUUCCUGGCCUAUUAAAAUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-50.40 kcal/mol

Ensemble Metrics

Free Energy: -59.48

Frequency: 0.0000

Diversity: 93.61

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((.......((((.((((((..(((((..........(((((((...((.(((............))))))))))))(((((.....(((.((((...)))).)))...(((((...............)))))..........(((((......................))))).)))))))))).((((........))))......)))))).))))((((((.((((.....((((.......(((((.((.......))..))))).......)))))))).)))))))))))((.....(((((.....))))).(((((.........)))))............))

Thermodynamic Ensemble Prediction

(((((,...,,,(((({((((,({{(((,((...{((((((({,{{{,.,,,.,((,,..........,})}))|||}}.,.........(((.((({...}))).)))...(((((...............)))))....,,,,}}|||.|......................,},,,.)))))))))}}{({{....,,}}}},,......}))))),)))}((((((.(((({{,...,.........,||||.,,......,||{{|||,,..)}}}}))),}))).)))))))))))((..,,,{{{{{...,,))}}|.(((((.,.....,.)))))............))