Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0025500

Sequence Length

420 nt

GC Content

0.3524

GAUUGUACUUUUUUUCCUCCCUACAGACAGCCUUUUGAUUGAUUAUCAAUUUACCUUCAGCUUAUUACAGGAAGAUGAUCGCCACCAUACUGCCAUAAACUUUAUAGCAAACCCAGAACAGUCGAACAAAAAUCUGGAUAUAUCAAUUAAUGCAUCAAACAACUUUAAUCUCAACAUUACGUGGUCUGUCGGUUCAACAGCUGGAACAAUAUCUGGGGAAGAGACUUCUAUAGUUUCCAAGAAUAAUAUAAAGGAAUACAGAGAUAGUUUUUCCUAUGAAAAAUUUAACUUUAGAAGCAAUCCUAACAUUACAUUCUAUGUGUACGUCAGCAACUUUUCCUGGCCUAUUAAAAUACAGAUUGCAUUCUCACAACACAAUACAAUCAUGGACCUUGUGCAGUUUUUUGUCACCUUCUUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-63.50 kcal/mol

Ensemble Metrics

Free Energy: -72.16

Frequency: 0.0000

Diversity: 105.27

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((.((..........((.((((((.((...(((((((((.((((.(((.(((............)))))).))))...........(((.((((...)))).)))...(((((...............)))))....))))))))).)).....................(((...))))))))).))..........)).))))).)(((((((((((((((((.....((((..............)))).....))).)))))...((((((.............((((((((((.......(((((.....))))).(((((.........))))).............)))))).))))...............)))))).....((((((....))).))))))))))))

Thermodynamic Ensemble Prediction

(((((({.,....{(({{{((.((((((.((...{((((((({,{{{,.,,,.,((,,..........}})}))|||}}.,.........(((.((({...}))).)))...(((((...............)))))....,}}}}}}||.|,.....................|},.,.))})))))),}|{{{...,,.,}},}}..,.,||)}|)}|||{{((,,,..}|||||{..............)))}...,{||..{(((((((....)))))))}...}},,((((((((((....,,,{{{{{...,,))}}|.(((((.,.....,.))))).............)))))).))))..........))))))).((((....((((((....))).)))....)))).