Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0025900

Sequence Length

394 nt

GC Content

0.3503

ACAGCCUUUUGAUUGAUUAUCAAUUUACCUUCAGCUUAUUACAGGAAGAUGAUCGCCACCAUACUGCCAUAAACUUUAUAGCAAACCCAGAACAGUCGAACAAAAAUCUGGAUAUAUCAAUUAAUGCAUCAAACAACUUUAAUCUCAACAUUACGUGGUCUGUCGGUUCAACAGCUGGAACAAUAUCUGGGGAAGAGACUUCUAUAGUUUCCAAGAAUAAUAUAAAGGAAUACAGAGAUAGUUUUUCCUAUGAAAAAUUUAACUUUAGAAGCAAUCCUAACAUUACAUUCUAUGUGUACGUCAGCAACUUUUCCUGGCCUAUUAAAAUACAGAUUGCAUUCUCACAACACAAUACAAUCAUGGACCUUGUGCAGUUUUUUGUCACCUUCUUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-56.60 kcal/mol

Ensemble Metrics

Free Energy: -64.29

Frequency: 0.0000

Diversity: 108.95

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((.....((((((...))))))........)))......((((((.((((.........(((((.((((.............((((((.(((............)))((((.((((..(((((......................)))))..)))).)))).((((........))))....))))))..((((((((((.....((((..............)))).....))).))))))).((((((.............((((((((((.......(((((.....))))).(((((.........))))).............)))))).))))...............))))))...))))))))).....)))).))))))...

Thermodynamic Ensemble Prediction

(,{{,...,{((((({..,}}}}}|...,({{{{{{......,|||||,|{{{,{{,{,.....(((.((({...}))).)))...(((((...............)))))..........{{{{{......................}}}}}.))))),,))),||||...}))))}}......)(((((((((,(((((((...{|((((..............)))}.....||}.|||||||{{,,,||,,,}},...,,.,((((((((((...,,,,{{{{{...,,))}}|.(((((.,.....,.))))).............)))))).))))........,,.....,},))}...,,||||||,...,})})},)))))))))