Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0027600

Sequence Length

237 nt

GC Content

0.3291

UCGAACAAAAAUCUGGAUAUAUCAAUUAAUGCAUCAAACAACUUUAAUCUCAACAUUACGUGGUCUGUCGGUUCAACAGCUGGAACAAUAUCUGGGGAAGAGACUUCUAUAGUUUCCAAGAAUAAUAUAAAGGAAUACAGAGAUAGUUUUUCCUAUGAAAAAUUUAACUUUAGAAGCAAUCCUAACAUUACAUUCUAUGUGUACGUCAGCAACUUUUCCUGGCCUAUUAAAAUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-26.80 kcal/mol

Ensemble Metrics

Free Energy: -31.31

Frequency: 0.0007

Diversity: 57.23

Structure Visualization

Structure Prediction

MFE Structure Prediction

............(((((((.((((..(((((......................)))))..)))).)))).((((........))))....(((((((((((....(((.....((((..............)))).....)))...))))))))).))...........((((........))))...(((((.....))))).(((((.........)))))...........)))

Thermodynamic Ensemble Prediction

............(((((((.((((..(((((......................)))))..)))).)))).((((......,,}}}}....,{,,(((({{{(,(((((,.,{{((((..............)))}.....}},.|}}||)))))..}}...,,,.,,},.|||}},...,.}},,...{{{{{.....)))}}.(((((.,....,}.))))).,,........)))