Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0028600

Sequence Length

297 nt

GC Content

0.3468

AACAAGGGCUACCUAUUGGGUACUAUGCUCACUACCUGGGUGAUGGGAUCAUUCGUACCCUAAACUUCAGCGUCCCGCAUUAGACCUAUGUAACAAAAGCUUGCACAUAUGCCCCUUAAAUCUAAAAUAAAAGUCGAAAUUAUUUUAAAAAGAAAUACUAAUAUCAAAAAGAGGAAAUUAGUCAUUACUACUAUUGGGUUUCACUUGUAACUGACAAGUCAUUUCCUUUUACUGCUUUCAAGAUUUUCUCCUUUUCUUUCUUUGGCUUUCAGCAAUUUAAUCACGAUGUAUCUAUAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-37.60 kcal/mol

Ensemble Metrics

Free Energy: -46.51

Frequency: 0.0000

Diversity: 93.54

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((........((((((.(((((((.(((....))).))))..)))..)))))).........(((...)))........(((((..(((....))).))))).))))...............(((((((((............(((((..((.....((..((((((((((..((((((((..................)))).)))).....))))))))))..))......))..)))))...........)))))))))................((((....))))

Thermodynamic Ensemble Prediction

....{((({..,,,..{((((.({((((,,,,.,,{{{{{{,..(((,.,....},.)))...}}..}}).))...))),,})))))}{(({,,....,.}))}}.....))}}.,,..........,.({((((({{..,,,,,,,...{((((..,,.....{{..(((((((((({,((,,,,{{.,.....{{,....{{{{||,,.,,))}))}.}}}))))))}..}}......,}},)))))..,},,.....))))))))}..,,...........,,}||......,,