Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0028900

Sequence Length

250 nt

GC Content

0.3120

GGCUAUCACACUAAAGCAAGAGUGCUACGAGGGAAAAUGAUGUUCUCUUCCUAAAUUUCACAGUAAGAACAUUUGCAUUAGUCUCCCAAAGGCAGAAACUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGUUUGAAAACUACUGGCUUGGCGAAAGUAAAAUUGGCUUUGAGGGUGAGAAUUUGAUCUGGAUUCAGAUUUCUCUCUGCCUUAACAUAUUUUAGACUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-35.34 kcal/mol

Ensemble Metrics

Free Energy: -39.32

Frequency: 0.0016

Diversity: 53.86

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((....(((((.(((((.((.(((((((((((.......))))))).............)).)).)).))))).))))).((((((.(.(((...................................................................))).))))).)).........)))))((((((((((((....((((((....))))))..)))).)))...............)))))

Thermodynamic Ensemble Prediction

(((((....{((((.(((((.((.((({{{(((({...,,..|}}}}}},............))},).)).))))).))))}.{(((,{{(.(((...................................................................))).))))).)}.........)))))((((((((((((....((((((....))))))..)))).))),,.........,,,.)))))