Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATRNL1_0029600

Sequence Length

363 nt

GC Content

0.4298

CUACAGUGCAGACUAUGGAGAGAAGGAUGAUUGAAAGGGAAAUUGGGCCAGACCGCCUAGGCCUUGAAUACCAUGCUGAGUGUCUUGGGCUUUAUUCUGUUGGCAACAGGAAGACAUUAAAGAAUUAUGACCUGAGGAAUGAAAAGUUGAGAGCUUUUUGGUUUUUAUUGUUUGGUGUUAGUCUGGUAGCUUGUGUAGGAGGAAUUGGAGGAAGAAAAAUCUAGAGGCAAAAUGACCACAAGGCAAUGAGGACGUGAACCAAGGACACUGAAGGAGCUAUUUCAGAGGAUAAAGGGAUAUAACCUUGCAACCAAUUCAGUAUCAAGAGCAACAGGACAGCAGAGUAUACCAAAGUGGGGUUCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-75.80 kcal/mol

Ensemble Metrics

Free Energy: -83.11

Frequency: 0.0000

Diversity: 93.74

Structure Visualization

Structure Prediction

MFE Structure Prediction

...((((.((..((.........))..))))))..((((...((((((......)))))).))))((((.((((..((.(((((((..(((...(((((((...))))))).(((((((((.(((...((((........((((((((...))))))))))))...))).))))))))).((((.((.((((.((......(((((((..(.(((....)))...((....(((.((.((......)).)).)))...)).......((((((......))))))......((((.......)))).)..))))))).....)).)))).)).))))))).))).))))))..)))).)))).

Thermodynamic Ensemble Prediction

,{.((((.((..({.|.......}}..}}}}}}..,(({...{{((((......))))}).)))|(((,.((((..((.(((((((..(((...(((((((...,}}}}}}.(((((((((.(((...((((........((((((({...})))))))))))...))).))))))))).{(({,((.((((.{(,,....(((((((..,.,{,....})}...{(,....{|.||.|..,|,..,|.||.}||,..||.....{.((((((......)))))).,....,{||.......)))).}..)))))))..,..)}.)))).)),))))))).))).))))))..)))).,))),