Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATXN10_0006200

Sequence Length

515 nt

GC Content

0.4388

GUCUUGCUUAAAUCAUCCGGACAAAAAAAUUGUUGCCUACUCUUCAAUGAUUUUGUUUACAUCCCUUAAUCAUGAAAGAAUGAAAGAACUGGAGGAGAACCUCAAUAUUGCAAUUGAUGUCAUAGAUGCUUACCAAAAACAUCCUGAAUCAGAAUGGCCGUUCUUGAUUAUUACAGACCUCUUUCUGAAAAGCCCGGAAUUGGUACAAGCCAUGUUUCCCAAACUGAACAAUCAAGAAAGAGUUACACUGUUAGACCUUAUGAUAGCCAAGAUAACGAGUGAUGAGCCACUCACCAAGGAUGACAUCCCUGUGUUUUUGCGGCAUGCUGAGUUGAUUGCAAGCACCUUUGUGGAUCAGUGCAAGACUGUGCUCAAGCUGGCCUCUGAGGAGCCUCCUGAUGAUGAGGAGGCACUGGCUACAAUUAGGCUUCUCGACGUCCUGUGCGAAAUGACUGUGAAUACUGAGCUGCUCGGCUAUCUGCAGGUUUUCCCUGGCUUGCUGGAAAGAGUGAUUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-123.70 kcal/mol

Ensemble Metrics

Free Energy: -135.63

Frequency: 0.0000

Diversity: 175.58

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((....(((....((((((((..((((..(......)..))))..))))))))......(((..((((......))))))).....((((....))))....(((((((((((.(((...(((((...(((((((((.((((((((((((....)))).)))))....)))..((((((((((..((...((((.((((....))))...))))....))......)).)))))))).....((((((.......))))))..........(((((......)))))....(((........)))))))))))).)))))..)))))))))))))).(((....))))))....)))))))((.((((.(((.((((...((((((((((((.......)))))))...((((.......))))..(((((.....)).))).....(((((.((((((((...))))).))).))))).)))))...)))).))).....))))...))

Thermodynamic Ensemble Prediction

({,,,||,..,{(((((((({(((,{..((((,,{......|..))))||}}}}},,.......{,,..|({{......}))},,}..{{{(,(({{{{||||,...(((((...((((((..{((,((({,.,,,,,,{{{,({,{,,((({,({{{,||||{{||||.,,.{{{..(((((((({,...,...((((.((((....)))).,,))))....}}}.....))})))))))),,...||||{{.......|}}|||,{,.,.....(((((......)))))..,,,(({{...}}}).})}))}}}}|.|||,.{{||{||,},|||||..,,({...,,)).,...})))),,,,..})||.|)}.,))}.,.,|||.(((((((.......)))))))..}|}}},....})))).}}}.))))))...)))))..,,,,{(({.((((((((...))))).))).}))))})))))))})),}}}))))}..},}))}}}}