Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ATXN10_0011200

Sequence Length

250 nt

GC Content

0.3320

AACAAGCUGAAAGAAAAGCAGGAGGAAUAUGGAAAACUGGAAUACCAUCAGCCACCUUGAUCAGGUGAAAUUUAGUGAACACUGCACCAAUAACAGCAUGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGUUUUCAGUGUAUAAACUUAUCUUCUUUCUCUCUAGGUAAAUGAGCUGGAUGGUAUCCCGUUGAUCCUGGACAACUGCAACAUCAGUGACAGUAACCCCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-35.98 kcal/mol

Ensemble Metrics

Free Energy: -40.35

Frequency: 0.0008

Diversity: 43.41

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((........)))(((.((.....(((.(((.(((.(((((((((((((((.....)))))...........((((((.......................................................................))))))......((((((...........))))))....))).)))))))))).)))..)))......((((..((....))..))))..)))))

Thermodynamic Ensemble Prediction

.....(((,,......}||((,.({.....(((.(((.((,{(((((((((((((((.,,..|||}|,,....{((..((((((.,................................................................,,...))))))....}}|,|,,|,}...,,.,,.)))),...}.)))}}))))))))).)))..))).,..,.{|||}.,{.,,,))..}}))..,,}))