Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_C3P1_0003400

Sequence Length

392 nt

GC Content

0.5740

ACAAAACCCACUGGCCAGUGGAUGAGCAGAAUCUGGGCUCCCUGUACACCAUUGAGGCCACAGCCUAUGGGCUCAUGCAGAAGCUGGAGCUGGGCCGGUACAAUGAGACACACGCCAUAGCCAAGUGGCUACUAGAGAAGCAGGAGCUGGGAGGAGGCUUCAGGUCCACCCAGACCACGGUGGUGGCCCUUGAAGCUCUGACCCGCUUCCGCGAAGCUGUCCCCUUCAAGGGCAUCCAGGAUCUCCACGUCCAGAUCAGAGCCCCCAAGACAGCCCUGAAUGUGAAUUGGUACAUUGAUCACAGCAAUGCCUACCAACAGCGGUCAGCAAAGUUCCUUGCCCAGGACGACCUAGAGAUCAAAGCCAGUGGCAACGGGAGAGGCACCAUCUCG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-132.90 kcal/mol

Ensemble Metrics

Free Energy: -138.43

Frequency: 0.0001

Diversity: 119.37

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(.....((((((((..((((((((((....(((.((((((.(((....(((((..(((...((((...(((((..((....))..))))))))).))).)))))........(((((......)))))..........))))))))).)))....))))...))))))((.......))(((..((((((((((....(((..(((((...))))).)))..))))))))))..))).((((((..(((((...((((.((..........)).))))..((...(((((((((((.......)))))..))))))..))((...((((......)))))).))))).....))))))...)))))))).....)..((((.....)))).

Thermodynamic Ensemble Prediction

.(.....((((((((..(((({((,{(,,..(((,((({{{{(({...,(((((.,(((...((((...(((((..((....))..))))))))).))).)))))........{{{{(,,,,..,}))),,........||}|||||}{||,{{{,||||{{{|,||||({........},)))}|,||||||||}}}},,|},|||||.}}},,||{|||..}}},,,||||.{|,..(((((,..,{{{{,}}||,|,||}}....}}}})).||||.{((...(((((((((((.......)))))..))))))..))},},}|||..,,.,,}})),},))}}).,,}.))}}))...)))))))).....)..((({.....)))).