Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CADPS2_0000600

Sequence Length

288 nt

GC Content

0.3681

CAACAGUACCAUUCAAAAAUAGAUGAUCUGAUCGACAACAGUGUAAAAGAAAUCAUUUCACUGUUAGUUUCAAAGAAACCAGGAAUGGAUCUGGCAGACACCUAUAUUAUGUUUGUUCGGCAAAACCAAGAUAUUCUUCGAGAAAAGGUCAAUGAGGAAAUGUAUAUAGAAAAGUUAUUUGAUCAAUGGUACAGCAGUUCCAUGAAAGUCAUUUGCGUGUGGUUGACUGAUAGAUUAGACCUCCAACUCCAUAUUUACCAGCUGAAGACGCUCAUCAAGAUUGUGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-47.00 kcal/mol

Ensemble Metrics

Free Energy: -53.62

Frequency: 0.0000

Diversity: 103.16

Structure Visualization

Structure Prediction

MFE Structure Prediction

(..(((..((((((.......(((......)))...(((((((.(((........)))))))))).(((((...)))))...))))))..)))(((((((.........)))))))..((.....)).......(((((.((....(((.((((.(((..((............(((((.(.(((((.((((.((((....((((...)))))))))))).)))))).)))))..........))..))).)))).)))..))))))).)(((((.......))).))

Thermodynamic Ensemble Prediction

(..{.(((((((({.....,,{,{,.{{{,||,{{{(((((((.(((.,....,.)))))))))).|||{{...}},,|{{,|..}}}.,)))|{{{{{,.{{{{{..{|||||,|{{({,....||..,{...{{{||..|....||},..|))),)}}}}}}}}}}}....,}}}}}}},|,}))))))).|..}{{.{(({{..,||,,.,({((,{{{{{{.{,({{{,.,.,|........,}},.)))).}.)}))},,}.)))|,||,.....})))).})