Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CADPS2_0004100

Sequence Length

394 nt

GC Content

0.4137

CAAUGGCUCAGCAACAUCAGAAGACCUUUUUUGGAAGCUUGAUGCACUGCAAAUGUUUGUCUUUGAUCUGCACUGGCCAGAACAGGAAUUUGCCCACCACUUAGAGCAAAGACUUAAACUAAUGGCCAGUGAUAUGCUAGAGGCCUGUGUCAAAAGAACAAGAACUGCAUUUGAACUCAAGCUACAAAAGGCAAGCAAAACAACUGACUUGCGCAUUCCAGCUUCCGUUUGCACUAUGUUUAAUGUAUUAGUCGAUGCCAAAAAGCAAAGCACCAAACUCUGUGCCCUGGAUGGAGGACAAGAGUUUGGUAGUCAAUGGCAACAGUACCAUUCAAAAAUAGAUGAUCUGAUCGACAACAGUGUAAAAGAAAUCAUUUCACUGUUAGUUUCAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-93.70 kcal/mol

Ensemble Metrics

Free Energy: -103.07

Frequency: 0.0000

Diversity: 103.46

Structure Visualization

Structure Prediction

MFE Structure Prediction

(....)((..(.(((.................(((((((.(((((...((((.(((((((((((......(((((((((....(((..(((((.(........).)))))..))).......)))))))))....(((.(((..(.((((....((........))))))..)..))).)))....)))))))))))...........)))))))))..)))))))...((((.((....)).))))...((((((((((.........((((((((((((((.(((.....)).).)).)))))))))).))...))))..(((...((((........))))..)))))))))(((((((.(((........)))))))))).))).)..))

Thermodynamic Ensemble Prediction

(....)((..{.{{{{{{(((..,....|||{(((((((.(((((...{(({.((((((((((({.,...(((((((((....(((..(((((.(........).)))))..))).......))))))))).,,.(((.{{|,,,,|||||...,|..,,,,...})))),,)..}}).})}....}}})|||||||.......,,.,)))))))}}}.))))))),..{{{{,{{,,,,|,.}|||,,.{{{||||{,,....}},..|{((((((((((((.(((.....)).).))}}))))))))).}}.,{|||,..,,,..)}))|.......,),},.}))))),|||(((((((.(((.,....,.)))))))))).))).}..))