Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CADPS2_0010200

Sequence Length

354 nt

GC Content

0.4463

GGAUGGUUUAGCCCUGGCCAAGUCUUUGUGUUAGAUGAGUACUGUGCCCGUUAUGGUGUGAGAGGCUGUCACAGACAUCUCUGCUACCUUGCAGAACUGAUGGAACAUUCAGAAAAUGGUGCUGUCAUUGACCCUACCCUGCUCCAUUACAGCUUUGCAUUCUGUGCCUCUCAUGUGCACGGCAACAGGCCUGAUGGAAUUGGGACUGUUUCAGUGGAAGAAAAAGAAAGAUUUGAGGAGAUAAAAGAGAGACUCUCUUCCCUUUUAGAAAAUCAGAUAAGCCAUUUCAGAUACUGUUUUCCCUUUGGACGACCUGAAGGUGCUCUAAAAGCUACACUUUCAUUACUUGAAAGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-88.70 kcal/mol

Ensemble Metrics

Free Energy: -96.55

Frequency: 0.0000

Diversity: 133.91

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((((.((((((...((((((...(((..((.((..((((..(((((((...(((((((((((((...))))..(((((......))))).((((........))))..(((((.((..................)).)))))((((.........)))))))))))))))).))))..))))..)).))..))).))))))...)))).))............(((((...((((...((((((...))))))...))))...)))))...))))))))))(.((........))(((((((.....))))))).(((.....)))....((((((.....)))))))

Thermodynamic Ensemble Prediction

(((((((({,.{{((((,,,((((({,,.|||..{{.{(..(((({|(({(,,,.,,((((((((({{{,,{{||||..(((((......))))).{(((,,......})}}..,{{({,(({{{,{,,{{.....,,,.}.|||||||,}||...,,..}}}||))))))))}),),))))},}))).,}),)),,}}}.)))})}...)))),)}............,((((((.,.,,{{{((({((,..,}))))}.)))))}...,,))})})}})))})))|,,...,,}..,}}((((({({...,||||||||(,|.....}),..,,||||||....,),)))))