Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CADPS2_0013200

Sequence Length

438 nt

GC Content

0.3927

GAAAGAAAAUUCCCCAAAUUUAUAGCAAAAGAUAUGGAGAAUAUGUAUAUAGAAGAGUUGCGGUCUUCAGUGAAUUUGCUAAUGGCCAAUUUGGAAAGUCUUCCAGUUUCGAAAGGUGGUCCGGAAUUUAAAUUACAAAAAUUAAAACGUUCACAGAACUCUGCAUUUUUGGACAUAGGAGAUGAGAAUGAGAUUCAGCUGUCAAAGUCCGACGUGGUACUGUCAUUCACCUUAGAGGCCUUCAGGGUGGUUGUAUGUUCUUUAAUGCUGUUAAAGAAGGAGAUACUGUAAUCUUUGCCAGUGAUGAUGAACAGGACAGAAUAUUAUGGGUUCAAGCCAUGUAUAGGGCCACAGGUCAAUCAUAUAAACCAGUUCCUGCAAUUCAAACCCAGAAACUGAAUCCUAAAGGAGGAACUCUCCAUGCAGAUGCUCAGCUUU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-91.50 kcal/mol

Ensemble Metrics

Free Energy: -100.80

Frequency: 0.0000

Diversity: 158.82

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.((..(((((((.........(((((((.....((((((...((((...........)))).)))))).....)))))))..(((((.(((.((((.(.....).)))).)))..))))).)))))))...)).)(((.........((((...))))(((((((.((((((..((((((.((...(((.((((.(.((((....((((.(((((((.....((.(((((((.((.....))))))))).))..(.(((((((((...))))))))).).((..(((((((.((((((.((........)).)).))))..)))))))..))..)))))))...)))).)))).).)))).)))....)).))))))...))))))..(((...))).........((((.....))))))))))).((...)))))

Thermodynamic Ensemble Prediction

(,,,..{{((({{.,,.,....{((((({.....((((((...{(((..,.....,..)))}.)))))).....})))))}..(((((.{((,((({.{...,.}.)))).}}}..)))}),)}}}}}}...|,.,,,,..,......((((...)))){((((({.|{{{{{,.{,((({.{{.{,{({.,{{|,{.{|{|,...||||||{({({{.,|,||{.{((((({.({{..,|}}})))))|,||..{{((({((({(,,,|,|||||||,..{{..||{{{{|,||||{|,||,.,,,.,,)),}},)))}..}}}}}}}..))..)))))})..,))))}})})}).,}}}.},,....||{{|,|||...,,,.....|||.,})))..,,,,...{{|||,..}))))))))))}.||,,,,,}))