Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CADPS2_0014000

Sequence Length

319 nt

GC Content

0.4295

AUGGGGGACUCAAGGAGAUUUCACCACCACCCAUCCUCGGCCUGUGGUCAAAGUGAAACUCUUCACAGAAAGCACUGGAGUUCUGGCCCUGGAAGAUAAAGAACUGGGAAGGGUGAUAUUAUACCCAACUUCUAAUAGCUCCAAAUCAGCUGAAUUACACCGAAUGGUAGUUCCAAAAAAUAGCCAGGAUUCUGACUUAAAAAUCAAACUGGCAGUGCGAAUGGAUAAACCAGCACAUAUGAAGCAUAGUGGAUAUCUGUAUGCCCUUGGACAGAAGGUUUGGAAAAGAUGGAAAAAACGUUACUUUGUUCUAGUUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-72.30 kcal/mol

Ensemble Metrics

Free Energy: -78.58

Frequency: 0.0000

Diversity: 90.28

Structure Visualization

Structure Prediction

MFE Structure Prediction

....(((((((..(((((((((((.(((((((......))...)))))....)))))).))))).(((......))))))))))....((((((((((((((((......(((((......)))))...(((((.....((((((((..(((....(((((....))).))(((((......(((((.....(((........)))..))))).((((...(((.....))))))).......(((((..((....)).)))))..))))))))..)))))))).....))))).....))).))))).)))..)))))

Thermodynamic Ensemble Prediction

.,{{(((((((..(({{,{{{{{{.{{{{{{{.,,...||,,.}}}}|,...|||}}},||}},.{{{....,.))}))})))},,}}{{||{,{,,,,,(((((((({,(((((,,....,}}||,.,{({{{.....((((((((..(((,{{{((,{{....}))}))|((({......(((((,,,,.{,,......,,)),..))))).((((...(((.....))))))).......(((((..((....)}.)))))..}})),)))..))))))))...}.))),......))),))))}))))}}))),)