Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CADPS2_0014100

Sequence Length

497 nt

GC Content

0.4406

GAGAUGAGAAUGAGAUUCAGCUGUCAAAGUCCGACGUGGUACUGUCAUUCACCUUAGAGAUUGUCAUAAUGGAAGUGCAAGGCCUGAAGUCAGUUGCUCCCAAUCGAAUUGUUUACUGUACAAUGGAAGUGGAAGGAGAAAAACUUCAGACAGACCAGGCCGAAGCCUCAAGGCCACAAUGGGGGACUCAAGGAGAUUUCACCACCACCCAUCCUCGGCCUGUGGUCAAAGUGAAACUCUUCACAGAAAGCACUGGAGUUCUGGCCCUGGAAGAUAAAGAACUGGGAAGGGUGAUAUUAUACCCAACUUCUAAUAGCUCCAAAUCAGCUGAAUUACACCGAAUGGUAGUUCCAAAAAAUAGCCAGGAUUCUGACUUAAAAAUCAAACUGGCAGUGCGAAUGGAUAAACCAGCACAUAUGAAGCAUAGUGGAUAUCUGUAUGCCCUUGGACAGAAGGUUUGGAAAAGAUGGAAAAAACGUUACUUUGUUCUAGUUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-119.40 kcal/mol

Ensemble Metrics

Free Energy: -128.97

Frequency: 0.0000

Diversity: 148.10

Structure Visualization

Structure Prediction

MFE Structure Prediction

(......((((...)))).((((.....(((((...(.(((((((((....(((((((.....)).))).)).(((((.....(((((((...((.((.(((.....(((((.......))))).....))).)).))....)))))))...(((((((((((.(((....)))....(((((((...................)).)))))..))))))..)))))...(((((....))))).....)))))((((((((((((((((...........)))))..(((((......)))))..........((((.......))))(((((((........))))))).........)))))))))))................))))))))).).)))))....)))).........(((((..((....)).))))).)((((((((((.(...((....((((.......)))).)).).)))).))))))

Thermodynamic Ensemble Prediction

,.,,,.{(((({{,{{||{((((.....{{{{{,..{,{{{{{{{({,{,.,,,{,{{....,}}.,}},}}.{{{{(..{{,({((({(,,,((,((.(((.....(((((.......))))).....))).}|,||....}))))}}.,.(((((((((((.(((....)))....(((((((......,{,....,,....)).)))))..))))))}.,))))...(((((....)))))....,)))))|||{|||{||||{{{{........,,.}||||..(((((......}))))...}}}}...||||}},...}))))|||||{{{{{....})),}}||{{,......|||||||||,|,,........}}...})))),||||...{||,,...}))))}}.......(((((..((....)}.))))){{((,,,,,,||))}}}}}},..{{((.......)))).,})),)))).)))),,