Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CADPS2_0017200

Sequence Length

437 nt

GC Content

0.4188

CUGGAUAACGCAGAUGAACAAGCAGCCCAGAUCAGAAGGGAACUUGAUGGCCGGCUGCAAUUGGCAGAUAAAAUGGCAAAGGAAAGAAAAUUCCCCAAAUUUAUAGCAAAAGAUAUGGAGAAUAUGUAUAUAGAAGAGUUGCGGUCUUCAGUGAAUUUGCUAAUGGCCAAUUUGGAAAGUCUUCCAGUUUCGAAAGGUGGUCCGGAAUUUAAAUUACAAAAAUUAAAACGUUCACAGAACUCUGCAUUUUUGGACAUAGGAGAUGAGAAUGAGAUUCAGCUGUCAAAGUCCGACGUGGUACUGUCAUUCACCUUAGAGAUUGUCAUAAUGGAAGUGCAAGGCCUGAAGUCAGUUGCUCCCAAUCGAAUUGUUUACUGUACAAUGGAAGUGGAAGGAGAAAAACUUCAGACAGACCAGGCCGAAGCCUCAAGGCCACA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-93.60 kcal/mol

Ensemble Metrics

Free Energy: -103.47

Frequency: 0.0000

Diversity: 132.92

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.......))).((.....((((((...(((((........)))))....))))))..(((.((.......)).))).((((......))))((((((((((((((((.....((((((...((((...........)))).)))))).....)))))).)))...)))))))...(((((((((((((..((((((((((((((....((((.....)))).....((((...)))).......))))))))...(((..(((.(.(((...)))..).)))...)))((((......))))...)))))).)))))........)))))).)).....(((((((...((.((.(((.....(((((.......))))).....))).)).))....)))))))........((((..........)))).))

Thermodynamic Ensemble Prediction

((({,...,.|}}.{{.....((((((...((((,.,{....})))))....)))))).,(((,({.......||,}},.((((......))))|||,,{{{,(((((((.....((((((...((((..,.....,..)))).)))))).....))))))}.}|}||}))}|||,,.,,,||||||({{{..,{{{((({{|{{{,{{{,,.,,.....},}},,,..((((...)))).,||{{{||||||||,..{{{,.{{{{{,(({...}}}.,}{||....}}}||||,,,...}})),,})}}))}.}}}}}}},}....}}))))})),.{{{((({{((,.,((.((,(((.....(((((.......))))).....))).}},))....)))))}),}.,,}}}||||...|||,...)))),}}